Show me the data!

September 16th, 2015 | Posted by in Open Access - (2 Comments)

Yesterday, I tried to read a piece of research, relevant to my interests that was published in 1949. Sadly as is usual, I hit a paywall asking me for £30 + tax to read it (I didn’t pay).

Needless to say, the author is almost certainly deceased so I can’t simply email him for a copy.

The paper copy is useless to me, even though my institution probably has one somewhere. I need electronic access. It would probably take me an hour to walk to the library, do the required catalogue searches, find the shelf, find the issue, find the page, re-type the paragraphs I need back into a computer, walk back to my desk etc… That whole paper-based workflow is a non-starter.

I noted the article is available electronically online to some lucky, privileged subscribers – but who? Why is the list of institutions that are privileged enough to have access to paywalled articles not public information? It would be extremely helpful to know what institutions have access to which journals & which journal year ranges.

I received an overwhelming number of responses. Probably over a hundred in total. Huge thanks to all those who took part.

Given such a brilliant community response it would be remiss of me not to share what I’ve learnt with everyone, not just those who helped contribute each little piece of information. So 24 hours later, here’s what I now know about who can access this 1949 paper (data supporting these statements is permanently archived at Zenodo):

Mounce, Ross. (2015). Data on which institutions have access to a 1949 paper, paywalled at Taylor & Francis. Zenodo.

I’m not pretending the following analysis of the data is rigorous science. It’s not. It’s anecdata about access to a single paper at a single journal (a classic n=1 experiment). Of course it also relies on each contributor correctly reporting the truth, and that some potential responses may have self-censored. The sampling is highly non-random and reflects my social sphere of influence on Twitter; predominately US and UK-centric, although I do have single data points from Brazil & Australia (thanks Gabi & Cameron!). Nevertheless, despite all these provisos it’s highly interesting anecdata:

The United Kingdom of Great Britain and Northern Ireland:
Of responses representing 41 different UK institutions including my own, only 3 have access to this paper, namely: University of Cambridge, University of Oxford, and University of Glasgow.
Had I got more responses from a wider variety of UK HEIs like the University of Lincoln and University Of Worcester where I also have friends, I suspect the overall percentage of UK institutions that have access would be even smaller! I’m particularly amused that it appears that no London-based institution has electronic access to this paper!

North America:
Of responses representing 29 different institutions in Canada and the United States, only 7 have access to the paper, namely: Virginia Tech, University of Illinois, University of Florida, North Carolina State University, Case Western Reserve University, Arizona State University, and McGill University. It’s intriguing that North American institutions appear to have slightly better access to this journal as originally the journal was published in London, England!

The ‘rest of the world’ (not meant in a patronising way):
Of responses representing 23 different institutions not based in the UK, Canada, or the United States, only 2 definitely have access to this paper: Wageningen University and Stockholm University. I note that the person who contributed data on Stockholm University access does not have an official recognised affiliation with Stockholm university and that they used alternative methods *cough* to discover this (just for clarity and to further demonstrate the sampling issues at play here!).

Despite asking far and wide. I only found 11 different institutions that actually have electronic access to this paper, and none from London where the paper was actually published.

I’m fascinated by this data, despite its limitations. I’d like to collect more and collect it more efficiently. Perhaps the librarian community could help by publishing exactly what each institution has access to? Although one conversation thread seemed to indicate that libraries may not even know exactly what they have subscribed to at any one point in time (Seriously? WTF!).

Why is this stuff important to know?

If I wait 26 years, it will be available for free in the Biodiversity Heritage Library. I hope I live that long!

What to do next?

If your institution isn’t listed in my dataset so far, please do still try and access this article and let me know if you can or cannot instantly access it via your institutional affiliations from Taylor & Francis.

Given we have researchers coming from all corners of the globe for OpenCon later this year, I will soon explore whether together, as the OpenCon community, we can do something like this on a grander scale to more rigorously document the patchy nature of subscription-provided access.

The final word

I’ll leave the final word, to the obvious ‘elephant-in-the-room’ that I haven’t discussed much so far, they are the 99.99% relative to us privileged institutionally-affiliated lucky-ones. I am very obviously aware of and do care about, independent researchers & readers of the ‘general public’; neither of which can afford subscription-access to most paywalled journals:

## I am supporting RIO Journal. I think you should too

September 1st, 2015 | Posted by in Generation Open | Open Access | Open Data | Open Science | Publications - (5 Comments)

Today (2015-09-01), marks the public announcement of Research Ideas & Outcomes (RIO for short), a new open access journal for all disciplines that seeks to open-up the entire research cycle with some truly novel features

I know what you might be thinking: Another open access journal? Really?

Myself, nor Daniel Mietchen simply wouldn’t be involved with this project if it was just another boring open access journal. This journal packs a mighty combination of novel features into one platform:

• 1.) RIO will publish research proposals, as well as regular research outputs such as articles, data papers and software – this has never been done by a journal before to my knowledge
• 2.) RIO will label research outputs with ‘Impact Categories’ based upon UN Millennium Development Goals (MDGs) and EU Societal Challenges, to highlight the real-world relevance of research and to better link-up research across disciplines (see below for some example MDGs).

• 3.) RIO supports a variety of different types of peer-review, including ‘pre-submission, author-facilitated, external peer-review‘ (new), as well as post-publication journal-organized open peer-review (similar to that pioneered by F1000Research), and ‘spontaneous’ (not journal-organized) post-publication open peer-review which is actively encouraged. All peer-review will be open/public, in keeping with the overall guiding philosophy of the journal to increase transparency and reduce waste in the research cycle. Reviewer comments are highly valuable; it is a waste not to make them public. When supplied, all reviewer comments will be made openly available.
• 4.) RIO offers flexibility in publishing services and pricing in a bold attempt to ‘decouple’ the traditional scholarly journal into its component services. Authors & funders thus may choose to pay for the publishing services they actually want, not an inflexible bundle of different services, as there is at most journals.

Source: Priem, J. and Hemminger, B. M. 2012. Decoupling the scholarly journal. Frontiers in Computational Neuroscience. Image licensed under CC BY-NC.

• 5.) On the technical side of things, RIO uses an integrated end-to-end XML-backed publication system for Authoring, Reviewing, Publishing, Hosting, and Archiving called ARPHA. As a publishing geek this excites me greatly as it eliminates the need for typesetting, ensuring a smooth and low-cost publishing process. Reviewers can make comments inline or more generally over the entire manuscript, on the very same document and platform that the authors wrote in, much like Google Docs. This has been successfully tried and tested for years at the Biodiversity Data Journal and is a system now ready for wider-use.

For the above reasons and more, I’m hugely excited about this journal and am delighted to be one of their founding editors alongside Dr Daniel Mietchen. See our growing list of Advisory and Editorial Board members for insight into who else is backing this new journal – we’ve got some great people on board already! If you’re interested in supporting this initiative please do enquire about volunteering as an editor for the journal, we need more editors to support the broad scale and ambition of journal. You can apply via the main website here.

## What is Journal Visibility?

August 28th, 2015 | Posted by in Publications - (2 Comments)

I’ve just read a paper published in Systematic Biology called ‘A Falsification of the Citation Impediment in the Taxonomic Literature‘.

Having read the full paper many times, including the 64-page PDF supplementary materials file. I’m amazed the paper was published in its current form.

Early on, in the abstract no less, the authors introduce a parameter called ‘journal visibility’. Apparently they ‘correct’ the number of citations for it.

We compared the citation numbers of 306 taxonomic and 2291 non-taxonomic research articles (2009–2012) on mosses, orchids, ciliates, ants, and snakes, using Web of Science (WoS) and correcting for journal visibility. For three of the five taxa, significant differences were absent in citation numbers between taxonomic and non-taxonomic papers.

I count over twenty further instances of the term ‘visibility’ or ‘visable’ in this paper. It is clearly an important part of the work and calculations. But what is it and how did they correct for it? All parameters in reputable scientific papers should be clearly defined, as well as any numerical ‘correction’ operations performed. Yet in this paper I honestly can’t find any given explicit definition of ‘journal visibility’. As Brian O’Meara points out, they define highly visible journals as “those included in WoS and with a good standing”. Good standing is not further defined or scored. No definition is given for what a lowly visible or middlingly visible journal is. All journals indexed in Web of Science are assigned an Impact Factor. Thus ‘included in WoS’ and ‘has Impact Factor’ are two ways of saying the same thing.

For the sake of clarity I will now quote and number all other passages in the paper, aside from the abstract, that mention ‘visibility’ or ‘visible’ (I have highlighted each instance in red):

1 & 2 & 3

In more detail, we address five questions: Does publishing taxonomy harm a journal’s citation performance? Is it within the possibilities of journal editors to influence taxonomy’s visibility? If more high-visibility journals opened their doors to taxonomic publications, would taxonomy’s productivity be sufficient for an increase in the number of taxonomic papers in these journals? Can taxonomy be published by taxonomists only or by a larger community? And finally, would the community use the chance to publish more taxonomic papers in highly visible journals?

4

Just 14 of the 47 journals published both taxonomic and non-taxonomic papers on the focal taxa on a yearly basis in the years 2009–2012 (Table 1). The analyzed taxonomic publications in these 14 journals might have experienced lower visibility than publications in the other 33 journals. This is due to the fact that the average IF 2012 of the 14 journals with both taxonomic and non-taxonomic publications was significantly lower ( 1.16±0.51 standard deviation [SD]) than the average IF of the other 33 journals ( 2.66±1.60 ; Student’s t -test, P<0.001 ).

5

Because of the correction for journal visibility, we consider the results for the 14 journals to be more representative of the citation performance of taxonomic versus non-taxonomic per se than the results for all journals.

6 & 7 & 8

[Section Heading] EDITORS CAN INCREASE THE VISIBILITY OF TAXONOMIC PUBLICATIONS

For strengthening the impact and prospects of taxonomy, equal opportunity is needed for taxonomists and non-taxonomists. In practice, this means that taxonomists should be able to publish in highly visible journals (those included in WoS and with a good standing). Editors of highly visible periodicals that include taxonomy will contribute actively to reducing the taxonomic impediment and, considering our analyses, might on top of this do the best for their journals.

9 & 10

The IF 2012 of these 19 journals that (in principle) publish taxonomy ( 2.61±1.64 ) does, on average, not differ significantly from that of the 14 journals that do not publish taxonomy at all ( 2.73±1.61 ; Student’s t -test, P=0.84 ) meaning that equal visibility for taxonomists and non-taxonomists might, in fact, not be out of reach. In essence, for many editors of highly visible periodicals, it might not so much be a question of changing the scope of their journals but of increasing the frequency of taxonomic publications and thus simply of communicating the willingness to publish taxonomy to the community

11 & 12 & 13

[Section Heading] TAXONOMY’S PRODUCTIVITY WOULD BE SUFFICIENT TO INCREASE THE NUMBER OF PAPERS IN HIGHLY VISIBLE JOURNALS

It is not enough, however, for editors of highly visible journals to actively invite taxonomic contributions. A crucial question about whether increasing taxonomy’s visibility will work is the capacity of taxonomy to follow the invitation. One way to approach this issue is looking at the growth rate of taxonomy

14

To our knowledge, a comprehensive taxonomic literature database is available just for animals, Zoological Record (ZR). For 2012, the latest year considered here, ZR lists 2.1 times more publications on animal taxonomy than WoS (Fig. 2b, c). This indicates that already in the short term, there is sufficient taxonomic publication output for editors of highly visible journals to indeed increase their share in taxonomy.

15

On the whole, the capacity for increased publication of taxonomy in highly visible journals seems to be there. Accepting that the potential exists, there is still a question of whether taxonomy’s flexibility will be sufficient for a change in publication culture to be realized.

16 & 17 & 18 & 19

[Section Heading] THE COMMUNITY WOULD LIKELY USE THE CHANCE TO INCREASE TAXONOMY’S VISIBILITY

… This suggests that taxonomists indeed would use also other chances of publishing in highly visible journals, should the opportunity arise. The resulting shift from aiming at low visibility to targeting highly visible journals will be very important for taxonomists in working toward both an improved image (Carbayo and Marques 2011) and an improved measure of their scientific impact (Agnarsson and Kuntner 2007).

20 & 21 & 22

Editors of highly visible journals in biology could help (i) increase the visibility of taxonomic publications by encouraging taxonomists to publish in their journals (thereby generally not harming but possibly boosting their journals) and (ii) increase total taxonomic output by making it attractive for scientists working in species delimitation (with their primary focus different from taxonomy) to publish the taxonomic consequences of their research.

The task of taxonomic authors, in turn, will be to follow the invitation and to submit indeed their best papers to the best-visible journals available for submission—just as authors of non-taxonomic papers do.

My inferences on visibility

For independent, unbiased confirmation, I looked-up the definition of ‘visibility’ online and found:

### Noun

visibility ‎(countable and uncountable, plural visibilities)

1. (uncountable) The condition of being visible.
2. (countable) The degree to which things may be seen.

By the above definition, which is not unreasonable, I would have thought that open access journals would have the highest ‘journal visibility’ as everyone with an internet connection is able to see articles in them without having to login or pay money to view.

Popular subscription access journals like Nature arguably have middling visibility as many scientists have access to them (although not that many actually read all the articles in them, I certainly don’t). Finally, many subscription access journals are known to be less widely subscribed to by both individuals and institutions e.g. Zootaxa (I would love to have data to demonstrate this more objectively, it is certainly true for UK Higher Education Institutions that significantly more subscribe to Nature than to Zootaxa).

I get the feeling that the authors of this paper did not score ‘visibility’ in this manner.

Many of the mentions of ‘visibility’ appear near discussion of Impact Factor (IF). Perhaps the authors mean to suggest that visibility and Impact Factor are one and the same thing or are highly-correlated? No evidence or citation is given to support this idea. I find this conflation of ‘visibility’ and Impact Factor to be simply wrong and dangerously misleading. Why?

Take the visibility of Elsevier journals for instance. They range in Impact Factor from 0 (many journals e.g. Arab Journal of Gastroenterology), to 2 (e.g. Academic Pediatrics), up to 45 (The Lancet). Yet I’d argue the visibility of most Elsevier subscription journals is the same because institutional libraries tend to (be practically forced to) buy Elsevier journals as a bundle – the euphemistically-titled ‘Freedom Collection‘. With the privilege of an institutional affiliation you typically either have access to all the Elsevier journals, including the cruddy ones, or you have access to none of them (in one ARL survey from 2012, 92% of surveyed libraries subscribed to the Elsevier bundle). Unfortunately very few academic libraries opt to subscribe to just a few select Elsevier subscription-only journals, rather than the bundle, MIT is one of the rare exceptions. Thus whether an individual subscription access Elsevier journal has an Impact Factor of 0, 2, 5, or 10 the global visibility of articles in Elsevier journals is relatively similar between different Elsevier journals, except only for the very most popular journals like The Lancet which might have an appreciable number of individual subscribers and institutions that subscribe to the journal without subscribing to the rest of Elsevier’s bundle of journals.

Journals aren’t a good unit of measure anyway – citations, views, downloads and ‘quality’ (broadly-defined) can vary greatly even within the same journal. Articles are a more appropriate unit of measure and we have abundant article-level metrics (ALMs) these days. Let’s not lose sight of that fact.

Surely this article needs correction at the very least? This is more than just a minor linguistic quibble. If the authors mean to say Impact Factor every time they say ‘visible’ or ‘visibility’ why don’t they just do this? Perhaps it is because Impact Factor is so widely and rightly derided, not to mention statistically illiterate (the distribution of journal article citations are well known to be skewed, you shouldn’t take the mean but the median to measure central tendency. The Impact Factor uses the mean in its calculation – oops!) they knew that it wouldn’t be meaningful and so masked it by using ‘visibility’ a weasel-word instead?

This article seems to be asking: Is it within the possibilities of journal editors to influence taxonomy’s visibility Impact Factor.

## I’m saying NO to Wiley

August 18th, 2015 | Posted by in Ecology | Open Access | Publications | Wiley | Wrongly selling OA articles - (7 Comments)

[Update 2015-09-19: since writing this, I notice my open access article has now been unpaywalled at Wiley’s site. No-one from Wiley has reached out to me to explain how, why, or when this happened. No compensation has been offered, nor any apology. I note that all the other articles in the special section, which should also be open access (CC BY) are still on sale, behind a paywall. Selling access to articles that should be open access is very scammy publishing. Shame on Wiley.]

I got invited to review a manuscript by a British Ecological Society journal (MEE) that is published with Wiley recently.

I rejected the request and will from now on decline to review for all Wiley journals. In this post I duplicate my email to the Assistant Editor (Chris Greaves) explaining why. FWIW Chris has handled my letter extremely well and will forward it on for me to where it needs to be seen/read within the British Ecological Society.

Below is the email I sent earlier today in full:

from: Ross Mounce <ross.mounce@gmail.com>
to: coordinator@methodsinecologyandevolution.org
date: 18 August 2015 at 11:57
subject: Re: Follow-up: Invitation to Review for Methods in Ecology and Evolution

Dear Chris,

Thank you (and Rich FitzJohn) for inviting me to review this manuscript.

It looks interesting from the abstract and in other circumstances I would certainly agree to review it.

However, I refused to review this manuscript and will refuse to review any subsequent manuscript for this publisher (Wiley) because I believe they are actively impeding progress in science by choosing to operate a predominately subscription-based business model – artificially restricting access to knowledge that taxpayers (through government funding) and charities predominantly fund. Furthermore they do an extremely poor job of it.

• They produce but actively withhold full text XML (even from subscribers). Reputable open access publishers have no qualms in making their full text XML available to all. This is deeply frustrating for those interested in synthesis, reproducibility and getting the most from published science in a time-efficient manner. As the manuscript I was just asked to review was principally about ‘automated content analysis’ I find this particularly galling and I am wondering why the authors thought it was appropriate to submit this to such a journal.
• They use an outdated back-end system: ‘ManuscriptCentral’ which is by all accounts an extremely poor system. Wiley have made huge profits each and every year in the past decade and yet seem completely unwilling to re-invest that in improving their systems. There wasn’t even a free text box to explain my reasons for declining to review this manuscript. Utterly poor, neglected design. Try PeerJ or Pensoft’s submission system. They have clearly worked hard and invested time and effort into making publishing research better for everyone, not just their own profit-margin.
• Wiley’s hybrid open access charge ($3000) is outrageously expensive and bears no resemblance or link to the actual cost of production or services provided. I am aware of the ‘discount’ levied for British Ecological Society members (down to$2,250). The ‘discount’ is only gained if one of the authors pays ~ $80 to join BES (full, ordinary member rate). That is still far too high. For context, some other open access fees: PLOS ONE charges$1350, PeerJ just $99 per author (the manuscript I was just asked to review has only 4 authors), Ubiquity Press journals$500, and Biodiversity Data Journal is still FREE ($0) whilst in launch phase. This to me is strong evidence of either deep inefficiency or profit-gouging or a mixture of both on Wiley’s part, none of which are excusable. I am certainly not alone in thinking this. See recent tweets from Rob Lanfear (an excellent scientist): https://twitter.com/RobLanfear/status/630523174061342720https://twitter.com/RobLanfear/status/630526920086568960 • Wiley are a significant player in the modern oligopoly of academic publisher knowledge racketeering. Data from FOI requests in the UK show that in the last five years (2010-2014), 125 UK Higher Education Institutes have collectively spent nearly £77,000,000 renting access to knowledge that Wiley has captured. That’s just the UK. Wiley doesn’t pay authors for their content, nor do they pay reviewers. I don’t know why the British Ecological Society (BES) partners with these racketeers – I find this arrangement severely detrimental to the goals of BES and academic research. • Like the other big knowledge racketeers Wiley operate a ‘big bundle’ subscription system. By adding BES journals to this big bundle of subscriber-only knowledge, it makes it harder for libraries around the world to cancel their subscriptions to this big bundle. Wiley know this and hence are actively trying to acquire as many good journals as possible (e.g. ESA journals) to make themselves ‘too big to cancel’. • On a personal note, I am particularly aggrieved with Wiley because they are currently, without my consent, charging$45.60 including tax, to ‘non-subscribers’ for access to one of my open access articles that they have copied over from where it is freely available at the original publisher. Charging \$45.60 to access something that is freely available at the original publisher is simply astonishing and is just another facet to the lunacy of the many and multiple ways in which Wiley and companies like it seek to profiteer from and restrict access to research.

For all these reasons and many more I simply cannot agree to review manuscripts for any Wiley journal. I am already boycotting Elsevier, and am considering applying the same to subscription-access Nature Springer and Taylor & Francis journals for similar reasons.

I urge the British Ecological Society to reconsider their ‘partnership’ with this profiteering entity and to pursue publishing with organisations that are actually competent at modern 21st century academic publishing, particularly those that support and actively facilitate content mining e.g. Pensoft, PLOS, PeerJ, eLife, Ubiquity Press, MDPI and F1000Research, to name but a few.

Sincerely,

Ross Mounce

———————————–

I feel relieved to have done this. Having reviewed for Wiley only last month it didn’t feel right. Why would I help them whilst boycotting Elsevier? They are essentially as bad as each other. My position is more logically consistent now.

Many thanks to others who have also publicly written about refusing to review for legacy publishers, these posts certainly helped me in my decision-making:

Heather Piwowar: Sending A Message

Ethan White: Why I will no longer review for your journal

Casey Bergman: Just Say No – The Roberts/Ashburner Response

PS Having read Tom Pollard’s post on this matter, I might also write to one of the authors to explain why I declined to review their article. I wish them them well and I look forward to reading their article when it comes out.