Show me the data!

## What is Journal Visibility?

August 28th, 2015 | Posted by in Publications - (2 Comments)

I’ve just read a paper published in Systematic Biology called ‘A Falsification of the Citation Impediment in the Taxonomic Literature‘.

Having read the full paper many times, including the 64-page PDF supplementary materials file. I’m amazed the paper was published in its current form.

Early on, in the abstract no less, the authors introduce a parameter called ‘journal visibility’. Apparently they ‘correct’ the number of citations for it.

We compared the citation numbers of 306 taxonomic and 2291 non-taxonomic research articles (2009–2012) on mosses, orchids, ciliates, ants, and snakes, using Web of Science (WoS) and correcting for journal visibility. For three of the five taxa, significant differences were absent in citation numbers between taxonomic and non-taxonomic papers.

I count over twenty further instances of the term ‘visibility’ or ‘visable’ in this paper. It is clearly an important part of the work and calculations. But what is it and how did they correct for it? All parameters in reputable scientific papers should be clearly defined, as well as any numerical ‘correction’ operations performed. Yet in this paper I honestly can’t find any given explicit definition of ‘journal visibility’. As Brian O’Meara points out, they define highly visible journals as “those included in WoS and with a good standing”. Good standing is not further defined or scored. No definition is given for what a lowly visible or middlingly visible journal is. All journals indexed in Web of Science are assigned an Impact Factor. Thus ‘included in WoS’ and ‘has Impact Factor’ are two ways of saying the same thing.

For the sake of clarity I will now quote and number all other passages in the paper, aside from the abstract, that mention ‘visibility’ or ‘visible’ (I have highlighted each instance in red):

1 & 2 & 3

In more detail, we address five questions: Does publishing taxonomy harm a journal’s citation performance? Is it within the possibilities of journal editors to influence taxonomy’s visibility? If more high-visibility journals opened their doors to taxonomic publications, would taxonomy’s productivity be sufficient for an increase in the number of taxonomic papers in these journals? Can taxonomy be published by taxonomists only or by a larger community? And finally, would the community use the chance to publish more taxonomic papers in highly visible journals?

4

Just 14 of the 47 journals published both taxonomic and non-taxonomic papers on the focal taxa on a yearly basis in the years 2009–2012 (Table 1). The analyzed taxonomic publications in these 14 journals might have experienced lower visibility than publications in the other 33 journals. This is due to the fact that the average IF 2012 of the 14 journals with both taxonomic and non-taxonomic publications was significantly lower ( 1.16±0.51 standard deviation [SD]) than the average IF of the other 33 journals ( 2.66±1.60 ; Student’s t -test, P<0.001 ).

5

Because of the correction for journal visibility, we consider the results for the 14 journals to be more representative of the citation performance of taxonomic versus non-taxonomic per se than the results for all journals.

6 & 7 & 8

[Section Heading] EDITORS CAN INCREASE THE VISIBILITY OF TAXONOMIC PUBLICATIONS

For strengthening the impact and prospects of taxonomy, equal opportunity is needed for taxonomists and non-taxonomists. In practice, this means that taxonomists should be able to publish in highly visible journals (those included in WoS and with a good standing). Editors of highly visible periodicals that include taxonomy will contribute actively to reducing the taxonomic impediment and, considering our analyses, might on top of this do the best for their journals.

9 & 10

The IF 2012 of these 19 journals that (in principle) publish taxonomy ( 2.61±1.64 ) does, on average, not differ significantly from that of the 14 journals that do not publish taxonomy at all ( 2.73±1.61 ; Student’s t -test, P=0.84 ) meaning that equal visibility for taxonomists and non-taxonomists might, in fact, not be out of reach. In essence, for many editors of highly visible periodicals, it might not so much be a question of changing the scope of their journals but of increasing the frequency of taxonomic publications and thus simply of communicating the willingness to publish taxonomy to the community

11 & 12 & 13

[Section Heading] TAXONOMY’S PRODUCTIVITY WOULD BE SUFFICIENT TO INCREASE THE NUMBER OF PAPERS IN HIGHLY VISIBLE JOURNALS

It is not enough, however, for editors of highly visible journals to actively invite taxonomic contributions. A crucial question about whether increasing taxonomy’s visibility will work is the capacity of taxonomy to follow the invitation. One way to approach this issue is looking at the growth rate of taxonomy

14

To our knowledge, a comprehensive taxonomic literature database is available just for animals, Zoological Record (ZR). For 2012, the latest year considered here, ZR lists 2.1 times more publications on animal taxonomy than WoS (Fig. 2b, c). This indicates that already in the short term, there is sufficient taxonomic publication output for editors of highly visible journals to indeed increase their share in taxonomy.

15

On the whole, the capacity for increased publication of taxonomy in highly visible journals seems to be there. Accepting that the potential exists, there is still a question of whether taxonomy’s flexibility will be sufficient for a change in publication culture to be realized.

16 & 17 & 18 & 19

[Section Heading] THE COMMUNITY WOULD LIKELY USE THE CHANCE TO INCREASE TAXONOMY’S VISIBILITY

… This suggests that taxonomists indeed would use also other chances of publishing in highly visible journals, should the opportunity arise. The resulting shift from aiming at low visibility to targeting highly visible journals will be very important for taxonomists in working toward both an improved image (Carbayo and Marques 2011) and an improved measure of their scientific impact (Agnarsson and Kuntner 2007).

20 & 21 & 22

Editors of highly visible journals in biology could help (i) increase the visibility of taxonomic publications by encouraging taxonomists to publish in their journals (thereby generally not harming but possibly boosting their journals) and (ii) increase total taxonomic output by making it attractive for scientists working in species delimitation (with their primary focus different from taxonomy) to publish the taxonomic consequences of their research.

The task of taxonomic authors, in turn, will be to follow the invitation and to submit indeed their best papers to the best-visible journals available for submission—just as authors of non-taxonomic papers do.

My inferences on visibility

For independent, unbiased confirmation, I looked-up the definition of ‘visibility’ online and found:

### Noun

visibility ‎(countable and uncountable, plural visibilities)

1. (uncountable) The condition of being visible.
2. (countable) The degree to which things may be seen.

By the above definition, which is not unreasonable, I would have thought that open access journals would have the highest ‘journal visibility’ as everyone with an internet connection is able to see articles in them without having to login or pay money to view.

Popular subscription access journals like Nature arguably have middling visibility as many scientists have access to them (although not that many actually read all the articles in them, I certainly don’t). Finally, many subscription access journals are known to be less widely subscribed to by both individuals and institutions e.g. Zootaxa (I would love to have data to demonstrate this more objectively, it is certainly true for UK Higher Education Institutions that significantly more subscribe to Nature than to Zootaxa).

I get the feeling that the authors of this paper did not score ‘visibility’ in this manner.

Many of the mentions of ‘visibility’ appear near discussion of Impact Factor (IF). Perhaps the authors mean to suggest that visibility and Impact Factor are one and the same thing or are highly-correlated? No evidence or citation is given to support this idea. I find this conflation of ‘visibility’ and Impact Factor to be simply wrong and dangerously misleading. Why?

Take the visibility of Elsevier journals for instance. They range in Impact Factor from 0 (many journals e.g. Arab Journal of Gastroenterology), to 2 (e.g. Academic Pediatrics), up to 45 (The Lancet). Yet I’d argue the visibility of most Elsevier subscription journals is the same because institutional libraries tend to (be practically forced to) buy Elsevier journals as a bundle – the euphemistically-titled ‘Freedom Collection‘. With the privilege of an institutional affiliation you typically either have access to all the Elsevier journals, including the cruddy ones, or you have access to none of them (in one ARL survey from 2012, 92% of surveyed libraries subscribed to the Elsevier bundle). Unfortunately very few academic libraries opt to subscribe to just a few select Elsevier subscription-only journals, rather than the bundle, MIT is one of the rare exceptions. Thus whether an individual subscription access Elsevier journal has an Impact Factor of 0, 2, 5, or 10 the global visibility of articles in Elsevier journals is relatively similar between different Elsevier journals, except only for the very most popular journals like The Lancet which might have an appreciable number of individual subscribers and institutions that subscribe to the journal without subscribing to the rest of Elsevier’s bundle of journals.

Journals aren’t a good unit of measure anyway – citations, views, downloads and ‘quality’ (broadly-defined) can vary greatly even within the same journal. Articles are a more appropriate unit of measure and we have abundant article-level metrics (ALMs) these days. Let’s not lose sight of that fact.

Surely this article needs correction at the very least? This is more than just a minor linguistic quibble. If the authors mean to say Impact Factor every time they say ‘visible’ or ‘visibility’ why don’t they just do this? Perhaps it is because Impact Factor is so widely and rightly derided, not to mention statistically illiterate (the distribution of journal article citations are well known to be skewed, you shouldn’t take the mean but the median to measure central tendency. The Impact Factor uses the mean in its calculation – oops!) they knew that it wouldn’t be meaningful and so masked it by using ‘visibility’ a weasel-word instead?

This article seems to be asking: Is it within the possibilities of journal editors to influence taxonomy’s visibility Impact Factor.

## I’m saying NO to Wiley

August 18th, 2015 | Posted by in Ecology | Open Access | Publications | Wiley | Wrongly selling OA articles - (7 Comments)

[Update 2015-09-19: since writing this, I notice my open access article has now been unpaywalled at Wiley’s site. No-one from Wiley has reached out to me to explain how, why, or when this happened. No compensation has been offered, nor any apology. I note that all the other articles in the special section, which should also be open access (CC BY) are still on sale, behind a paywall. Selling access to articles that should be open access is very scammy publishing. Shame on Wiley.]

I got invited to review a manuscript by a British Ecological Society journal (MEE) that is published with Wiley recently.

I rejected the request and will from now on decline to review for all Wiley journals. In this post I duplicate my email to the Assistant Editor (Chris Greaves) explaining why. FWIW Chris has handled my letter extremely well and will forward it on for me to where it needs to be seen/read within the British Ecological Society.

Below is the email I sent earlier today in full:

from: Ross Mounce <ross.mounce@gmail.com>
to: coordinator@methodsinecologyandevolution.org
date: 18 August 2015 at 11:57
subject: Re: Follow-up: Invitation to Review for Methods in Ecology and Evolution

Dear Chris,

Thank you (and Rich FitzJohn) for inviting me to review this manuscript.

It looks interesting from the abstract and in other circumstances I would certainly agree to review it.

However, I refused to review this manuscript and will refuse to review any subsequent manuscript for this publisher (Wiley) because I believe they are actively impeding progress in science by choosing to operate a predominately subscription-based business model – artificially restricting access to knowledge that taxpayers (through government funding) and charities predominantly fund. Furthermore they do an extremely poor job of it.

• They produce but actively withhold full text XML (even from subscribers). Reputable open access publishers have no qualms in making their full text XML available to all. This is deeply frustrating for those interested in synthesis, reproducibility and getting the most from published science in a time-efficient manner. As the manuscript I was just asked to review was principally about ‘automated content analysis’ I find this particularly galling and I am wondering why the authors thought it was appropriate to submit this to such a journal.
• They use an outdated back-end system: ‘ManuscriptCentral’ which is by all accounts an extremely poor system. Wiley have made huge profits each and every year in the past decade and yet seem completely unwilling to re-invest that in improving their systems. There wasn’t even a free text box to explain my reasons for declining to review this manuscript. Utterly poor, neglected design. Try PeerJ or Pensoft’s submission system. They have clearly worked hard and invested time and effort into making publishing research better for everyone, not just their own profit-margin.
• Wiley’s hybrid open access charge ($3000) is outrageously expensive and bears no resemblance or link to the actual cost of production or services provided. I am aware of the ‘discount’ levied for British Ecological Society members (down to$2,250). The ‘discount’ is only gained if one of the authors pays ~ $80 to join BES (full, ordinary member rate). That is still far too high. For context, some other open access fees: PLOS ONE charges$1350, PeerJ just $99 per author (the manuscript I was just asked to review has only 4 authors), Ubiquity Press journals$500, and Biodiversity Data Journal is still FREE ($0) whilst in launch phase. This to me is strong evidence of either deep inefficiency or profit-gouging or a mixture of both on Wiley’s part, none of which are excusable. I am certainly not alone in thinking this. See recent tweets from Rob Lanfear (an excellent scientist): https://twitter.com/RobLanfear/status/630523174061342720https://twitter.com/RobLanfear/status/630526920086568960 • Wiley are a significant player in the modern oligopoly of academic publisher knowledge racketeering. Data from FOI requests in the UK show that in the last five years (2010-2014), 125 UK Higher Education Institutes have collectively spent nearly £77,000,000 renting access to knowledge that Wiley has captured. That’s just the UK. Wiley doesn’t pay authors for their content, nor do they pay reviewers. I don’t know why the British Ecological Society (BES) partners with these racketeers – I find this arrangement severely detrimental to the goals of BES and academic research. • Like the other big knowledge racketeers Wiley operate a ‘big bundle’ subscription system. By adding BES journals to this big bundle of subscriber-only knowledge, it makes it harder for libraries around the world to cancel their subscriptions to this big bundle. Wiley know this and hence are actively trying to acquire as many good journals as possible (e.g. ESA journals) to make themselves ‘too big to cancel’. • On a personal note, I am particularly aggrieved with Wiley because they are currently, without my consent, charging$45.60 including tax, to ‘non-subscribers’ for access to one of my open access articles that they have copied over from where it is freely available at the original publisher. Charging $45.60 to access something that is freely available at the original publisher is simply astonishing and is just another facet to the lunacy of the many and multiple ways in which Wiley and companies like it seek to profiteer from and restrict access to research. For all these reasons and many more I simply cannot agree to review manuscripts for any Wiley journal. I am already boycotting Elsevier, and am considering applying the same to subscription-access Nature Springer and Taylor & Francis journals for similar reasons. I urge the British Ecological Society to reconsider their ‘partnership’ with this profiteering entity and to pursue publishing with organisations that are actually competent at modern 21st century academic publishing, particularly those that support and actively facilitate content mining e.g. Pensoft, PLOS, PeerJ, eLife, Ubiquity Press, MDPI and F1000Research, to name but a few. Sincerely, Ross Mounce ———————————– I feel relieved to have done this. Having reviewed for Wiley only last month it didn’t feel right. Why would I help them whilst boycotting Elsevier? They are essentially as bad as each other. My position is more logically consistent now. Many thanks to others who have also publicly written about refusing to review for legacy publishers, these posts certainly helped me in my decision-making: Heather Piwowar: Sending A Message Ethan White: Why I will no longer review for your journal Casey Bergman: Just Say No – The Roberts/Ashburner Response PS Having read Tom Pollard’s post on this matter, I might also write to one of the authors to explain why I declined to review their article. I wish them them well and I look forward to reading their article when it comes out. ## Advice for journal-publishing academic societies August 2nd, 2015 | Posted by in Ecology | Open Access | Open Science | Publications - (3 Comments) I read some sad news on Twitter recently. The Ecological Society of America has decided to publish its journals with Wiley: Whilst I think the decision to move away from their old, unloved publishing platform is a good one. The move to publish their journals with Wiley is a strategically poor one. In this post I shall explain my reasoning and some of the widespread dissatisfaction with the direction of this change. Society journals should not be a profit-driven business The stated goals of The Ecological Society of America (ESA) are noble and I reproduce them here below to help you understand what the society in theory aims to do: • * promote ecological science by improving communication among ecologists; • * raise the public’s level of awareness of the importance of ecological science; • * increase the resources available for the conduct of ecological science; • * ensure the appropriate use of ecological science in environmental decision making by enhancing communication between the ecological community and policy-makers Reading those four bullet points, it strikes me that a society with this stated mission should be a vanguard of the open access movement. An efficient, well-implemented open access publishing system, supported (and thus empowered) by the ESA would positively address all four of those goals. Do I need to explain how open access would improve communication among ecologists? It should be obvious to most. Some facts: Universities around the world do not have access to all subscription journals, not even Harvard. Wiley’s big journal bundle of subscriptions is no exception to this rule. Brock University in Canada is one such notable example. ‘Ecology and Evolution’ is one of two “main themes” of Brock’s Biology Department yet it does not have access to the Wiley bundle of subscription journals. Furthermore, as the above tweet demonstrates many ecologists are not based at universities. Not all uses or readership of ecology journals is by ecologists, it’s absolutely not sufficient to just provide access to ecologists (alone). It’s vital that policymakers and the public have access to the latest research, no embargoes. Want evidence that policymakers lack access to research? Look no further than this blog post from a recent intern at the UK Parliamentary Office for Science & Technology (POST): The level of access to journals was far lower than I had expected (it was actually shocking) – I ended up using my academic access throughout my placement. If the ESA seriously wants to “ensure the appropriate use of ecological science in environmental decision making by enhancing communication between the ecological community and policy-makers” then making it easier for policymakers like those at POST to access research published in ESA journals would surely be a great way of doing that. How does the ESA expect to “raise the public’s level of awareness of the importance of ecological science” if most of the science that they themselves publish in their own journals is behind an expensive paywall?$20 for 30 day access to one article? Admittedly that’s cheaper than many but it’s simply not supportive of ESA’s mission.

Does this unnecessary paywall help raise the awareness of ecological science?

Lastly, with respect to increasing “resources available for the conduct of ecological science” the ESA urgently needs to consider the big picture here. Wiley, Springer Nature, Elsevier and other legacy publishers are a major drain on the financial resources available for research. With their big bundle deals they ransom/rent access to libraries for sums that can be up to many millions of dollars, every year, per institution. Money should instead be diverted into efficient, high-quality publishing systems like JMLR, Open Library of Humanities, PeerJ, Pensoft and Ubiquity Press to name but a few. All of these not only provide open access, but also high-quality publishing services at a significantly lower cost. Many provide added extras such as semantically-enhanced full-text XML which would make synthesis of ecological science easier. Wiley does not provide direct access to per article full-text XML even to its paying subscribers! They do half the job for thrice the price. Why would ESA want to help to sustain and enhance Wiley’s famous 42% profit margin? These legacy publishers are strategically merging, and acquiring journals in order to make it harder for libraries to cancel their dross-laden ‘big bundle’ subscription packages. It doesn’t seem like a logical decision to me or others.

Comparing this to other recent journal publishing changes

To put into context the ESA move to Wiley, let’s look at three other recent examples of academic societies changing publisher:

1.) Museum für Naturkunde Berlin journals (flipping to open access)

In 2014 all of their journals moved away from being published with Wiley. Their two zoological journals which have been around since before the ESA was even formed(!) transferred to open access publishing with Pensoft. Their Earth Science journal Fossil Record also moved away from Wiley, to open access publishing with Copernicus Publications. Guess what? The sky didn’t fall. I predict the articles in these journals will start being read, downloaded and cited more now that they are open access to everyone.

2.) Paleontology Society journals (switching to arguably a more benign, less profit-driven legacy publisher)

In 2015 PalSoc journals switched to be published with Cambridge University Press (CUP). I’m not super enthusiastic about CUP but if a society really wants to do legacy publishing, without worsening the stranglehold of the big publishing companies over libraries then CUP, or other university presses (Oxford, John Hopkins, Chicago) seem like safer custodians of academic intellectual property to me.

3.) American Society of Limnology and Oceanography (moving to Wiley)

To provide a fair comparison it’s important to look at what happens when a society journal joins Wiley. I know of one such case recently: ASLO journals. The transfer to Wiley was far from smooth or professional. In the few months that Wiley had the ASLO journals, they managed to ‘accidentally’ paywall thousands of articles that should have been available for free (as per ASLO’s wishes) and charged actual readers for reading these older should-be-free articles.  I paid $45.60 for access to one such ASLO article at Wiley – it should have been made available to all for free. Both Springer and Elsevier have also been caught doing this. The ESA currently makes some articles in its subscription journals ‘free to read’ to all, so I shall be closely monitoring the new Wiley-ESA journal websites when they launch, to see if they make the same conveniently profit-generating ‘mistakes’ again. How did this happen? Who was consulted? Why was this choice made? I for one was completely unaware that ESA were looking for a new publisher. I would have tried to help if I had known. I have many unanswered questions over the consultation process. For example, the ESA has an Open Science section and mailing list, its members are extremely knowledgeable about the academic publishing landscape and publishing technology. Was the ESA membership in it’s entirety specifically and clearly asked which publisher they would like the ESA to publish with? Did they ask their membership what features they wanted from their new publishing platform? I would have requested a platform that provides access to semantically-enriched full text XML – Wiley does not provide this. Given a choice, and the vital context and information given above I think few ESA members, policymakers, or members of the public would choose Wiley as ESA’s new publisher. I gather from Twitter that “any and all” were invited to submit a proposal to publish ESA journals and that Elsevier submitted a proposal. But having a lazy tendering process only biases decisions towards major conglomerates who have the time, energy and resources to make slick proposals – I wonder if smaller but high-quality publishing companies were pro-actively approached by ESA to submit a proposal? In the public interest, I think the ESA should publish the names of all organisations who submitted proposals to publish ESA journals – I think just that data alone might potentially reveal flaws in the tendering process. I’m finding it really hard to reconcile the goals of ESA and shareholder-profits motivation of Wiley. I genuinely think the leadership of ESA is out of touch with its membership and that they may not have been properly consulted about this major change to the society. This is a long post, and I’ve said enough, so I’ll leave it to a professional scholarly communications expert (Kevin Smith, Duke University), to have the last word about Wiley, and the recent trend towards cancelling Wiley subscriptions: I don’t know if Wiley is the worst offender amongst the large commercial publishers, or whether there is a real trend toward cancelling Wiley packages. But I know the future of scholarship lies elsewhere than with these large legacy corporations. Postscript But perhaps we can turn this negative into positive by creating resources and impartial educational guides for academic societies on how to negotiate better publishing deals, and how to start a tendering process with an eye towards the inevitable future of open access? If SPARC or SPARC Europe already provides these resources please do point me at them! ## Wiley are charging for access to thousands of articles that should be free March 26th, 2015 | Posted by in Publications | Wrongly selling OA articles - (9 Comments) [Update 5.30PM 2015-03-26: Wiley have now ‘freed’ the wrongly-paywalled articles in response to this. It doesn’t change the fact that these articles were wrongly on sale for 2 months and 26 days. They have also wrongly sold access to these articles.] Wiley are currently (3PM 2015-03-26) charging for access to thousands of articles that should be free to access. They have recently (legitimately) taken control of a journal called Limnology and Oceanography from the Association for the Sciences of Limnology and Oceanography (ASLO). The association makes clear in its guidelines for the journal that all articles are placed into Free Access after three years (source). Yet today, I see that Wiley is selling access to articles from Limnology and Oceanography for$45.60 USD (inc. tax). I know this because I bought access to an article myself. Screenshot at the bottom. In fact volumes 41 (1996) to 1 (1956), consisting of thousands of articles are currently on sale at Wiley.

Some Questions:

How many times has Wiley sold access to articles from this journal that are greater than three years old: i.e. articles that should be free to read?

Did the Association for the Sciences of Limnology and Oceanography (ASLO) give them permission to sell access to articles that are more than three years old?